Package: atlas 1.0.0
atlas: Stanford 'ATLAS' Search Engine API
Stanford 'ATLAS' (Advanced Temporal Search Engine) is a powerful tool that allows constructing cohorts of patients extremely quickly and efficiently. This package is designed to interface directly with an instance of 'ATLAS' search engine and facilitates API queries and data dumps. Prerequisite is a good knowledge of the temporal language to be able to efficiently construct a query. More information available at <https://shahlab.stanford.edu/start>.
Authors:
atlas_1.0.0.tar.gz
atlas_1.0.0.zip(r-4.5)atlas_1.0.0.zip(r-4.4)atlas_1.0.0.zip(r-4.3)
atlas_1.0.0.tgz(r-4.4-any)atlas_1.0.0.tgz(r-4.3-any)
atlas_1.0.0.tar.gz(r-4.5-noble)atlas_1.0.0.tar.gz(r-4.4-noble)
atlas_1.0.0.tgz(r-4.4-emscripten)atlas_1.0.0.tgz(r-4.3-emscripten)
atlas.pdf |atlas.html✨
atlas/json (API)
| # Install 'atlas' in R: |
| install.packages('atlas', repos = c('https://podalv.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:d48e1e07b7. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:atlas.connectatlas.containsatlas.csvatlas.dumpatlas.queryatlas.status
Dependencies:askpassbriocallrclicrayoncurldescdiffobjdigestevaluatefansifsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgbuildpkgconfigpkgloadpraiseprocessxpsR6rematch2rlangrprojrootsystestthattibbleutf8vctrswaldowithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Connects to ATLAS instance | atlas.connect |
| Returns the statistics information | atlas.contains |
| Queries ATLAS with a CSV() command and imports the contents of the csv into a data frame | atlas.csv |
| Dumps patient from ATLAS to a file on disk | atlas.dump |
| Queries ATLAS and returns a list of patient IDs | atlas.query |
| Returns the status of the ATLAS | atlas.status |
